| cbind.scanoneperm {qtl} | R Documentation |
Concatenate the columns from different runs of
scanone with n.perm > 0.
## S3 method for class 'scanoneperm': cbind(..., labels)
... |
A set of objects of class scanoneperm. These are
the permutation results from scanone (that is,
when n.perm > 0), generally run with different phenotypes or
methods. |
labels |
A vector of character strings, of length 1 or of the same
length as the input ..., to be appended to the column names
in the output. |
The aim of this function is to concatenate the results from multiple
runs of a permutation test scanone, generally for
different phenotypes and/or methods, to be used in parallel with
c.scanone.
The concatenated input, as a scanoneperm object. If
different numbers of permutation replicates were used, those columns
with fewer replicates are padded with missing values (NA).
Karl W Broman, kbroman@biostat.wisc.edu
summary.scanoneperm,
scanone, c.scanoneperm,
c.scanone
data(fake.f2)
fake.f2 <- calc.genoprob(fake.f2)
operm1 <- scanone(fake.f2, method="hk", n.perm=10, perm.Xsp=TRUE)
operm2 <- scanone(fake.f2, method="em", n.perm=5, perm.Xsp=TRUE)
operm <- cbind(operm1, operm2, labels=c("hk","em"))
summary(operm)