strip.partials {qtl}R Documentation

Strip partially informative genotypes

Description

Replace all partially informative genotypes (e.g., dominant markers in an intercross) with missing values.

Usage

strip.partials(cross, verbose=TRUE)

Arguments

cross An object of class cross. See read.cross for details.
verbose If TRUE, print the number of genotypes removed.

Value

The same class cross object as in the input, but with partially informative genotypes made missing.

Author(s)

Karl W Broman, kbroman@biostat.wisc.edu

See Also

plot.missing, plot.info

Examples

data(listeria)
sum(nmissing(listeria))
listeria <- strip.partials(listeria)
sum(nmissing(listeria))
[Package qtl version 1.11-12 Index]