| reorderqtl {qtl} | R Documentation |
This function changes the order of the QTL in a QTL object.
reorderqtl(qtl, neworder)
qtl |
A qtl object, as created by makeqtl. |
neworder |
A vector containing the positive integers up to the
number of QTL in qtl, indicating the new order for the QTL.
If missing, the QTL are ordered by chromosome and then by their
position within a chromosome. |
Everything in the input qtl is reordered except the
altname component, which contains names of the form Q1,
Q2, etc.
The input qtl object, with the loci reordered.
Karl W Broman, kbroman@biostat.wisc.edu
makeqtl, fitqtl,
dropfromqtl, addtoqtl,
replaceqtl
data(fake.f2) # take out several QTLs and make QTL object qc <- c(1, 6, 13) qp <- c(25.8, 33.6, 18.63) fake.f2 <- subset(fake.f2, chr=qc) fake.f2 <- calc.genoprob(fake.f2) qtl <- makeqtl(fake.f2, qc, qp, what="prob") qtl <- reorderqtl(qtl, c(2,3,1)) qtl qtl <- reorderqtl(qtl) qtl